I've been testing J-Link without the synergy e2 Studio just to see if I can connect to the board. It seems like J-Link Commander and J-Link GDB Server can connect to the board.
I still haven't figured out how to load the binary onto the board. Is there a way I can load a binary onto the board without using e2 Studio? If so, what is the name of the file and how do I transfer it? if the project is called blinky2, is the file called blinky2.elf ?